The integration of urban and rural road passenger transportation is an important foundation for the development of coordinative urban-rural. Firstly, the network topology structure of urban and rural passenger integrated transportation is set up to adapting Chongqing layout, and some performance integrating routes which could be implemented are also put forward; secondly, based on the analysis of Chongqing special layout which could be descript with“big urban and big rural” and the situation of trunk roads scarcity, the flexible performance expressway passenger transport and the management model of rural passenger transportation along highways is concluded; Finally, considering that the urban and rural road passenger transport integration might run into problems in practice, a series of suggestions are respectively put forward to solve the management, policies and technological specification and so on.