After constructing the evaluation index system of university’s philosophy and social sciences innovation capability, owing to the principle of analytic hierarchy process, this paper establishes the weight of each indicator using the method which unified the subjective tax power with the objective tax power. Because there is fuzziness in the evaluation of philosophy and social sciences innovation capability, this paper builds multi-level fuzzy synthetic evaluation module of philosophy and social sciences innovation capability based on the experts’ advice, and elaborates clearly the evaluating steps.