For driving the agricultural operation organizations to the direction that is helpful to ecoenvironment, based on the analysis of the factors which influence agricultural operation organizations’ ecologic performance, an ecologic performance evaluation system is designed and applied to calculate general performance by general method of point rating and analytic hierarchy process. In the meanwhile, some measures will lead the agricultural operation organizations to the developmental direction that is helpful to ecoenvironment such as constituting and consummating agroenvironmental protection laws and the system of compensations to agricultural ecology, reducing production cost of the agricultural operation organizations’ ecoproducts and improving the ecoproducts’ consumption climate.