With societal development, wastes exist in industry, agriculture and human life. In particular, a large volume of urban industrial sewage is discharged and pesticides and fertilizers are widely used, leading to groundwater pollution in many areas. Based on a water quality model of hydrodynamic dispersion and the multielement balance (MEB) method, a general program for simulating groundwater flow and quality is carried out using the program VC++ for visual presentation. Using this program in a case study, the transportation mechanism of groundwater flow and quality is simulated numerically. The result indicates that the program is visual and can be manipulated well. It offers a point of reference for the reasonable exploitation, protection and utilization of the groundwater.