As the BEM was used in the knaggy domain,its approach error was big.Domain Decomposition Method change the problem in the knaggy domain to the problem in several convex domains which do not wrap.The whole solution is gained by alternating boundary conditions between Dirichlet condition and Neumann condition on the common boundary.Domain Decomposition Method for Stokes equations in the anomalistic knaggy domain is presented,the example of Domain Decomposition Method in the flow of the lake in GuiYang City is given.