Continuous industries CIMS is a complex system consists of human and machines under certain environment. It has been proved that there is limitation to only pursue high degree intelligent system, so the idea of human machine can be used to research CIMS under system theory viewpoint. Combining advanced multi agent technology and theory, a human machine cooperation mechanism with agent as the middle medium is presented which can provide a more flexible information mutual interface. In addition, the roles of human and machine under this new mechanism are analyzed.