It is very difficult to build the accurate mathematical model of the wind turbine generator system because of the uncertainty of air kinetics and the complexity of power electronics, especially when the wind speed changes abruptly or there is a disturbance. But the classical control needs the model. Using neural network controller to the wind turbine generator system can overcome these difficulties. The wind speed can be followed and the maximum power can be obtained under low wind speed by using the power coefficient curve BP neural network and the optimum pitch angle BP neural network. The maximum power can be kept and under the allowed range in the condition of high wind speed. The simulation model and result are given under the environment of MATLAB. The fluctuation of wind speed can be controlled and the disturbance can be cancelled by BP neural network controller.