To improve the management of infrastructure construction and increase the benefit of investment, we presented major problems in infrastructure construction auditing of universities and colleges based on the analysis of practical working experience, analyzed the main causes of the problems from two aspects which were the construction management department and the construction unit, and proposed countermeasures. The countermeasures covered many aspects, including establishing a system of rewards and penalties, strengthening project data management and tender management, enhancing worksite management, and improving talent training.