Taking the comprehensive reform pilot project on education of full-time professional degree graduate student of Education Ministry as an opportunity, the current problems of course teaching of professional degree graduate student were analyzed. According to the training objectives and requirements of three types of engineers, curriculum system of full-time professional degree graduate student in the field of architecture and civil engineering was set up. Course teaching teams were formed, strengthening the teacher’s project training, reforming the methods of teaching organization. To ensure the teaching effect, all aspects of teaching process are monitored.