"Emerging Engineering Education"(3E) is proposed as the direction of China's engineering education reform, based on the new demand of national strategic development, new situation of global competition. It is very important that improve teaching based on multi-disciplinary for civil engineering in order to adapt to new requirements. Innovative ability is one of core goal of civil engineers' talents training, including innovative thinking, innovative skills, innovative consciousness, innovative vision and professional knowledge. There are two ways to improve civil engineers' innovation ability. One is improving innovative thinking based on multi-disciplinary integration of the curriculum system. The other is building the multi-level practice to enhance the innovative skills.