In view of the shortcomings of the traditional assessment methods, based on the reflection of the teaching practice of the course of urban and rural ecology and environmental planning, we establish the goal-oriented integration of the course with the main design courses, deeply analyze the teaching characteristics of the course in urban and rural planning specialty, and at the same time, combine the shortcomings of the assessment and evaluation of students in the course to propose the construction of a comprehensive assessment system with the teaching characteristics of the course itself. The course is adjusted to the traditional design course assessment method, and the assessment is used as a way to explore a new teaching mode to achieve multiple competency training. First of all, the course has been clarified from the philosophical level and the systematic nature of urban and rural planning level to distinguish the teaching focus from the design courses, establish the teaching goal of cultivating ecological values in urban and rural planning practice, emphasize the teaching process of multi-stage rational thinking, and reflect the “boundedness” of spatial design. Secondly, it follows the teaching characteristics of the course and constructs a comprehensive assessment system in the direction of explicit assessment process and scientific evaluation results. The above research contents follow the logical line of course ontology characteristics -assessment system construction -assessment system implementation, and the research results are of great significance both for optimizing the assessment and evaluation system of the course of urban and rural ecology and environmental planning and promoting the healthy development of the course teaching space system. It is expected that the research content of this paper can provide useful reference for the teaching and assessment of similar theoretical courses in urban and rural planning.