Independent colleges and junior colleges both are the indispensable components of higher education system in China. It is very necessary to conduct an objective, systematic and scientific evaluation for them, so as to really meet people’s demand for higher education. This paper discusses the significances, ideas, principles and specific practices of independent colleges and junior colleges evaluation in detail, and conducts a comprehensive analysis and elaboration about the evaluation results, with a view to provide a reference and help for the development of higher education and the demand of appropriate level of higher education.