The test of functional groups of microorganisms in Spiral Up-flow Reactor System and the correlation between microorganisms in the water and the main environmental factors are studied.The results show that the diversity of microorganisms population in the SUFR system is complex and the bio-community formed in the SUFR system is stable.The close relations between abundance of bacteria and nutrients are found.The correlation between heterotrophic bacteria and COD is 0.949.The correlation between organic phosphate bacteria and TP is 0.815. The correlation between nitrosobacteria and NH_3-N is 0.909. The correlation between disnitrifier bacteria and TN is 0.653.