There are a series of city environmental problems especially in the mountain city along with the city fast development. In recent decade, many scholars have studied the urban heat island, the urban temperature, the urban wind field, the precipitation and the urban visibility etc. But the urban thermal environment has not been settled radically. All the measures have not been used in the practice. And the researches in thermal environment of the mountain cities are very few. So the authors consider Chongqing as the researching object. Chongqing is one of the typical mountain cities in the semi-tropical. Sequentially we find out the characteristic of the thermal environment in the mountain city. Further the authors seek for the measures to plan and build ecological city. They conclude that CFD can be used in the simulation of urban environment, and use the result of simulation in urban planning is possible. The thermal environment in the center of Chongqing needs to be improved.