The common problems in the bachelor degree graduation design teaching in civil engineering are away from the reality, lack of teaching resources, the influence of employment problem and the ignorance of the innovation ability analyzed in this paper. In order to solve these problems, some reform in many aspects such as the topic selection, process guidance, paper review, defense management is carried out in School of Civil Engineering of Tianjin University. The two-way selection of students and teachers, teachers training, and the combination of offline and online and a series of reform measures are proposed. The purpose is to improve the quality of bachelor degree graduation design, train the ability of using the professional knowledge to solve practical problems. It has proved that the new system can effectively improve the overall level of bachelor degree graduation design.