The projects of teaching quality and teaching reform of higher education in China have been constructing and a large number of high-quality video open classes, MOOC, quality video sharing classes are arising extensive attention. The enthusiasm of applying flipped classroom mode has been increasing since its import to Chinese educational practitioners. Application and development situation of flipped classroom mode have been analyzed on the background of innovative country construction and talent strategy in the paper. In order to promote the cultivation of innovative talents, curriculum system of civil engineering specialty has been revised and support system for applying the flipped classroom mode in civil engineering courses has been built. The overall design of teaching mode has been designed and the specialized knowledge is divided. Teaching structure has been re-designed to ensure the teaching efficiency. Furthermore, the concept of learning effect assessment system is clarified, which provides reference for science and engineering specialties.